PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03463.1.g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 680aa    MW: 71970.8 Da    PI: 7.1404
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03463.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.84.8e-353224132102
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl+k+y++++d++++++isw+e+g++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+
  Zmw_sc03463.1.g00010.1.am.mk 322 FLTKTYQLVDDPAVDDVISWNEDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFA 393
                                   9*****************************************************************99.........**** PP

                                   ESXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkks 102
                                   ++ F++g+k+ll++i+r+k 
  Zmw_sc03463.1.g00010.1.am.mk 394 NDCFRRGEKRLLCDIHRRKV 413
                                   *****************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.5E-37315406IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.6E-59318411IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.71E-35319411IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.9E-31322411IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.4E-20322345IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.4E-20360372IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340361385IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.4E-20373385IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MDSLFDPFGR RNSNLDALLC STDSILDILA HGVRAAVSGH LPLGEALDST VDTMCGTLEL  60
RPSLRADLAW SLRPTPARVA LASGVAGVGS LRDTLAAGAG SALRVXXXXR CAARAAPWPV  120
TRLVPVACSP LWPMDRSASS TSASTLTLRT RDRLDGSTGH WQRAATLTHG ECLGFASPPP  180
PWIGIATTIY LQRKNLIAPR TRYPMIDTCP VHPGPCPRVP EPSRRKQPRE KVTEPSRSSS  240
AHHEANHTEP NRTLPPITAV HVPMELNPTP EDRAAGGYQC GRAHSARAGA AAAEASASEP  300
PPPAPVPSPA EAVGQRTLPT PFLTKTYQLV DDPAVDDVIS WNEDGSTFVV WRPAEFARDL  360
LPKYFKHNNF SSFVRQLNTY GFRKIVPDRW EFANDCFRRG EKRLLCDIHR RKVAPAAGLA  420
TAAAAAASGA VTVAAAPIPM ALPVTLPGSP GLSSDEQVLS SNSGSAEDHP HAPSGSGGGA  480
SGSASSDMGE ENERLRRENA RLTRELGQMK KLCNNIVLLM SKYAASQQLD ASAALSSVVN  540
NSGESSEALP QLPPLPPALL ELMPSCPAAL ATAAAGLAAE PDAAARLFGV SIGLKRTREE  600
DSGDGEEPAD HGRGSGEAKP EVSDAQQHPA AHPGSKETTP SSPDQHRWPI YRPTPVYHST  660
RVCNGQDPGP GSDQDGSSSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-2531441113120Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957414.11e-176PREDICTED: heat stress transcription factor B-2c-like isoform X1
SwissprotQ652B01e-144HFB2C_ORYSJ; Heat stress transcription factor B-2c
TrEMBLK3ZU131e-176K3ZU13_SETIT; Uncharacterized protein
STRINGSi030094m1e-176(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394